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Quizzes S2021: Quiz 1 (Hoffmann Lauritzen equation, Dimarzio Chapter, Flory I, Polymerization Transition); Quiz 2 (Wang; MR Paper; Tensile/Impact Experiment Papers; Cotton; Boue); Quiz 3 (Habibi); Quiz 4 (Transitory Helix); Quiz 5(Charge and stretching polyelectrolytes, Ising model); Quiz 6 (Milner packing factor 2020, 2005; Dinic Extensional Flow); Quiz 7 (Wu polycantanes, Pakula 1999 polycantanes,Rauscher 2020,Rauscher 2018, Zhang 2020,Brereton 2001); Quiz 8(Grinberg PNIPAM/Water/MeOH, Schild 1991, Schild 1992, Tanaka Book, Zhang H2O/MeOH structure, Scheraga hydrophobic effect, book on clathrates); Quiz 9 (Star Paper, Benoit, Daoud-Cotton); Quiz 10 (Conductive Polymer Scattering, Free Radical Conduction Boudouris); Quiz 11 (Li Paper on intrinsic viscosity for graphene oxide, Wen SALS graphene oxide, SALS graphene oxide fractions, Igor.pxp Wen SLS Data); Quiz 12 (NIST HPLC/SEC paper (supp. mat.), Dow Paper, Randall Richards g'); Quiz 13 (Soles paper); Quiz 14; Final

Homework S2022: HW1 (Hoffmann Lauritzen equation, Kos, Luo); HW2 (Parisi Ring Polymers); HW3 (Chen, Tzounis, Binder, GROMACS); HW4 (Simon, Simon SI, Hiemenz Lodge pp. 228 equation 6.4.11; Paper on Floculation, Paper on Collapse of a PE chain, Nature on gel electrophoresis in MEMS, Rheology of PEs, Nature on Double Helix, Conjugated polymer chain stiffness, Chain persistence and ion conductivity for batteries); HW 5 (van Ravensteijen, SI van Ravensteijen, igor experiment, Keane); HW6 (O'Connell, O'Connell Supplemental, Figure 4b digitized, Grosberg Chromatin study, Bottle Brush Gels, AFM Tensile Blob); HW7 (Characterization Class, Grinberg PNIPAM/Water/MeOH, Privalov, Schild 1991, Schild 1992, Tanaka Book, Zhang H2O/MeOH structure, Scheraga hydrophobic effect, book on clathrates); HW8 (Kancharla, Fajalia, Figure 3, Hammouda, OPE paper, Polymer Aggregation, PEDOT/PSS Seebeck, Supramolecular Polymers, Extentional Rheology, PVME/Water); HW9 (French Graphene Paper; Burchard Book p.113); HW10 (Epoxy Curing XPCS Hilmar Paper; Supporting Information Hilmar Paper; Reference 17 Particle Tracking; Reference 25 Scaled Exponential Decay; Fluid Mechanics of Microrhelogy; One Time/Two Time Correlation Functions; Multiwave Oscillatory Rheology; Calculate Two Time Correlation Function 2003; Flory Stockmeyer gelation equation; Mason 2000 GSE equation); HW11 (Rouse PNC Paper 2022; Supplemental Rouse PNC Paper 2022; Ref 54 Rouse PNC Paper 2022; MIT Slides on Rouse Model; Gert Strobl Book; Sticky Rouse Model; Supporting Info Sticky Rouse Model); HW12 (Nature Weavings; Ref 38; Ref 40; Ref 41; Ref 45; Ref 48; Ref 51; Ref 52; Slip Link Model and NSE; Review of the Flow of Bubbles and Foams 2022; Rheology of Dense Suspensions; Krieger and Dougherty Paper; Anton-Paar webpage on suspension rheology; Derivation of Krieger Dougherty Equation; Hsueh and Wei 2009; Mooney Viscosity 1989; Mooney-Rivlin Equation; Mooney-Rivlin Plot; Rubber Elasticity (H Marand); Mooney viscometer); HW13 (Shen Nature dielectrics; Supporting Info Shen; Osada 2D Dielectrics; Xu Chapter 11 (add f); Deng; Review of ML for Dielectrics; Perovskites; Supporting info for Perovskites; Nature Paper Synchrotron; Melting point deep eutectic; UHMWPE p. 831 (add f)); HW14 ( McKay 2006; Zhou Schweizer 2022; Supporting Info Schweizer 2022; Ref 8; Ref 10; Ref 35; Tyler Martin PRISM; Zhou Yavitt; Akcora 2009; Supplemental Ackora; Bailey Winey Review 2020; Huang Review 2022)

Homework S2023: HW 1 (McLeish Schneider Silk Simulation, Silk Nature); HW2 (Everaers , Kremer Grest 3000 citations , Example of LAMMPS simulation using KG Model ); HW3 (Chen, Tzounis, Binder, GROMACS, PERM method , dihedral angle wiki , leap frog method , steepest decent , Ensembles, dihedral angle protein structure , protein data bank, .pdb viewer); HW 4 ( Horkay Jack Douglas nanogels , Second Virial Coefficient, Noda Ref. 62, Ref 88 modulus of swollen gels); HW 5 (ChatGPT,Coil Globule Magnetic Tweezers Liu , Supplemental for Liu , Magnetic Tweezers Review , Giant Molecules Chapter 9 , Persistence 10 monomers, Kuhn 20, Freiburg AFM, Freiburg Supporting Info, Artifical Muscles ); HW 6 (O'Connell, O'Connell Supplemental, Figure 4b digitized (igor file .pxp), Figure 4b (.pdf), Grosberg Chromatin study, Bottle Brush Gels, AFM Ó Ó Tensile Blob); HW 7 (Dendrimers Nature, supplemental, Kainthan 2006 dendrimers, ul haq 2013, ul haq supplmental 2013, Nanolubricants, Steibeck Curve and Hersey number, Lubrication Regimes , Synvisc One , MALS/GPC , Bridge Viscometer Paper, Polymer Characterization Class , GPC with Light Scattering a zip file that makes "LSU Training Binder", Various types of lubricants, Degree of Branching ); HW8 ( Aomura Paper 2022 , Roland Mooney Rivilin Plot, Paper on MR Plot, Flory I P. 470 and 474, Herve Marand Notes rubber elasticity, j-PAAC , BLO2 at J-PAAC, Fragility of Glasses Nature 1999, Fragility and stretched exponentials, Wiki Fragility, Wiki Stretched Exponential, Wiki Weibull Distribution, Degennes paper on relaxation times for Figures 4b,5b,6b , Jon Nickels Talk, Jon Nickels Paper 2022, 2021 simulation of networks with variable chain length); HW 9 ( Rouse to Zimm Transition 2022 , Wagner Time Concentration Superposition 2006 , Microrheology Review , .pdf, ColbyRubenstein Ch. 8a, Zimm paper 1953 , Rubenstein R as paramter ); HW 10 (Qiao Janus, Qiao Supporting Info , Schwarzl Method, Palierne 1000 citations, Palierne Analysis 387 citations, Ref 41 to get G0, How to get relaxation spectra Honerkamp Weese 2019 , Review of Janus particle polymer nanocomposites, Wiki Maragoni effect, UC Davis, Ron Larson 2000 citations, Witten Nature Paper 1997, Flocking Janus Particles 2017 review); HW 11 ( McKay 2006; Zhou Schweizer 2022; Supporting Info Schweizer 2022; Ref 8; Ref 10; Ref 35; Tyler Martin PRISM; Zhou Yavitt; Zhou Yavitt Supporting Info Fig S4 Compares; Akcora 2009; Supplemental Ackora; Bailey Winey Review 2020; Huang Review 2022); HW 12 (Foglia Nature 2022; Foglia Supplemental, Membranes Review, Membranes book, Talk on QENS , Bee Quasielastic Neutron Scattering p. 124-147, 153, Ch. 5, p. 381-389, 399, Heterogeneity of PA membranes, Structure of Water Near Hydrophobic Surfaces, Water Uptake Rate, TMS, MPD, Fixed Window Scan); HW 13 (Koros 2023 Macro, Supporting Info Koros 2023, Koros 2013 ethane/ethylene, Koros CO2 Polyimid Membranes, Dual Transport Model for Glassy Polymers, Ref 14 upper bound, Ref 15 Upper Bound, Ref 16 Upper Bound, Ref 3 Coupling Separation, Ref 28 2012 Review on facilitated transport, 2008 Chemical Complexation, Solid facilitated transport 2001 , Ref 5 2012 pyrolysis, Langmuir Equation , Henry's Law , Raoult's Law, Ref 6 2023 paper antiplasticization, Ref 5 2023 paper Plasticization); HW 14 (Shen Nature dielectrics; Supporting Info Shen;Lectures on Phase Field Simulation; Osada 2D Dielectrics; Xu Chapter 11 (add f); Deng; Review of ML for Dielectrics; Perovskites; Supporting info for Perovskites; Nature Paper Synchrotron; Melting point deep eutectic; UHMWPE p. 831 (add f), QUESTION 2 Tg PaAPER,Chem Mat five areas fro Materials Research, AI Robot to get HDPE bottles, IR to separate PET bottles , Conveyer belts, Manual Sorting, Air to separate boxes, Crane loading station , CEN 2304 features article, Tesla Auto driving, Hands on Machine Learning, Goodyear Luxembourg Melt Instabilitily, Reference 3 melt instability, Deep learning for phase transitions 2023, Data Drive Design 2023)

Homework Spring 2024

2024:

HW1, Li Paper, Larson, Cates Paper, Specific Viscosity, Hydrotrope;
HW2; Coacervates Van Westerveld; Wiki Coacervate; Wiki Primordial Soup; Wiki PSA; Wiki Debye Length/screening; Bjerrum Length; Pluronics/Poloxamer; Triton X100; RAFT Polymerization; Linear Rheology; Wiki TTS; WLF vs Arrhenius; Winter Chambon; Van Gurp-Palmen Plot; Fluid Regime at low frequency LAOS; Figure 19 p19 Winter Chambon gel; Other Paper; Supporting Info other paper Stockmayer for other paper
Hydrotrope;
HW3; Chan 2024; Chan 2021;Chan supplemental 2021 Nature 2021; RAFT for Bottle Brush 2022; exp(-s/2l) equation 1 page 4; Olefin Methasis Polymerization schrock and gubbs; Polymer Brush; Methasis polymerization (ROMP)
HW4, Chen, Tzounis, Binder, GROMACS, PERM method , dihedral angle wiki , leap frog method , steepest decent , Ensembles, dihedral angle protein structure , protein data bank, .pdb viewer
HW5, Colby 2020, Colby Supplemental, Conductive Polymers, Kevlar, Glass transition, Glass Transition by DMA, Debye Relaxation, Mech. of Dyn., Modes of Relaxation, Specfic Rel., Liquid Crystal, Debye Waller Factor, Lindemann Criterion (10% rule), Group Contribution (method of last resort?), Flory-Fox and Fox eqns., Wiki DSC, Characterization Class DSC, DSC Polymer Science Learning Center Macrogalleria
HW6, Zhang Paper (2024), Zhang Supplemental, Wiki on protein folding
HW7, Kolbeck, Supporting Information, Video, Zero-mode waveguide, Halperin, de Gennes, Williams, Tongue Model, Poiseuille Equation, adeno-associated virus, Track Etched Membranes, Poly (2-oxaolines), Zero-mode waveguide, Capsid, Stockmeyer 1959 eqn 2.5
HW8, Schulz Lang 2024, Supporting Information, Preceeding Paper with simulation/synthesis, Tagged Chains Same Group 2024
HW9, Chaudhuri 2020, Chaudhuri 2019, Polymer Mixing: Tadmor Gogos chapter 7 p. 322-399 add f to end
HW10, Robles-Hernandez, Supporting Info RH, Alfonso, Benoit 1953, Benoit 1957
HW11, Meier, Ref. 29, Ref. 50, Ref. 51, Ref. 57
HW12, Yavitt 2020, Yavitt Supplemental, Trigg, Trigg Supplemental, Nature Paper, Nature Supplemental, Japanese Reflectivity
HW13, Tamasi 2022, Supporting Information Tamasi, Automated BCP Synthesis 2019 (PDF) , ML Training Paper 2023, LINK, Supporting Info 2023 List of Terms, 2018 Science paper, (Zhu Dielectric Paper from PPT Slide, Shen Nature dielectrics; Supporting Info Shen;Lectures on Phase Field Simulation; Osada 2D Dielectrics; Xu Chapter 11 (add f); Deng; Review of ML for Dielectrics; Perovskites; Supporting info for Perovskites; Nature Paper Synchrotron; Melting point deep eutectic; UHMWPE p. 831 (add f), Chem Mat five areas fro Materials Research, AI Robot to get HDPE bottles, IR to separate PET bottles , Conveyer belts, Manual Sorting, Air to separate boxes, Crane loading station , CEN 2304 features article, Tesla Auto driving, Hands on Machine Learning, Goodyear Luxembourg Melt Instabilitily, Reference 3 melt instability, Deep learning for phase transitions 2023, Data Drive Design 2023, (AI for target identification in warfare), (AI to improve performance in professional sports)
HW14, Wu Stretched Chain Dynamics, Wu Supplemental Stretched Chains, Ref 10 L^2 p. 1180 , Ref 43, Ref 8 Book on Polymer Rheology, Spherical Harmonics, Gandikota Collapse of Spheres, Example of Kramer-Grest Model using LAMMPS, Simple example of LAMMPS code you can do , Brackley Nature Paper that is extension of this example (2021)

Useful Links for Critical Reviews:
Citation Search for UC/Ohiolink

Plagiarism (PLEASE READ BEFORE YOU WRITE A CR)

Optional Projects
Project 1: Simulation of Random Walks
(Shape Distribtion Function of Solc B; A)
Project 2: More Random Walk Things
Project 2b: SAW by Loop Erased Random Walk (PHYSICAL REVIEW E 101, 012104 (2020))
Project 3: Ising Model Simulation using Metropolis Method
Metropolis web page (You can just search Google for Metropolis)
Ising Model UC Davis
Project 4: Dumbell Model Simulation
Monte Carlo

Simon Fraiser Univ. Simulation Class
Scott Korfhagen (MS UC 2007) Executables Project 1 and 2
Jessica Kangas 100 Random Walks in a Mov file